{
  "_id": "6a4c941c07c3fd5c3260dfdc",
  "Package": "chouca",
  "Title": "A Stochastic Cellular Automaton Engine",
  "Version": "0.2.99",
  "Authors@R": "c(person(\"Alexandre\", \"Genin\", , \"alexandre.genin@sete.cnrs.fr\", \nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3333-1338\")),\nperson(\"Guillaume\", \"Dupont\", , \"\", role = c(\"aut\")),\nperson(\"Daniel\", \"Valencia\", , \"\", role = c(\"aut\")),\nperson(\"Mauro\", \"Zucconi\", , \"\", role = c(\"aut\")),\nperson(\"M. Isidora\", \"Ávila-Thieme\", , \"\", role = c(\"aut\")),\nperson(\"Sergio A.\", \"Navarrete\", , \"\", role = c(\"aut\")),\nperson(\"Evie A.\", \"Wieters\", , \"\", role = c(\"aut\")) )",
  "Description": "An engine for stochastic cellular automata. It provides a\nhigh-level interface to declare a model, which can then be\nsimulated by various backends (Genin et al. (2023)\n<doi:10.1101/2023.11.08.566206>).",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = FALSE)",
  "RoxygenNote": "7.3.2.9000",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/alexgenin/chouca",
  "BugReports": "https://github.com/alexgenin/chouca/issues",
  "Repository": "https://alexgenin.r-universe.dev",
  "Date/Publication": "2026-03-27 15:28:08 UTC",
  "RemoteUrl": "https://github.com/alexgenin/chouca",
  "RemoteRef": "HEAD",
  "RemoteSha": "bec60d1836f7d0f395eaba48381c5415da138fd2",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-07 05:41:48 UTC",
    "User": "root"
  },
  "Author": "Alexandre Genin [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3333-1338>),\nGuillaume Dupont [aut],\nDaniel Valencia [aut],\nMauro Zucconi [aut],\nM. Isidora Ávila-Thieme [aut],\nSergio A. Navarrete [aut],\nEvie A. Wieters [aut]",
  "Maintainer": "Alexandre Genin <alexandre.genin@sete.cnrs.fr>",
  "_user": "alexgenin",
  "_type": "src",
  "_file": "chouca_0.2.99.tar.gz",
  "_fileid": "https://r2.ropensci.org/35592cdaab803dcf34814183602b4749d76a028e2d8f3fa62b1cdd084707c3d4",
  "_filesize": 454545,
  "_sha256": "35592cdaab803dcf34814183602b4749d76a028e2d8f3fa62b1cdd084707c3d4",
  "_expires": "2026-10-15T05:52:26.000Z",
  "_created": "2026-07-07T05:41:48.000Z",
  "_published": "2026-07-07T05:52:28.196Z",
  "_jobs": [
    {
      "job": 85544882359,
      "time": 210,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "8129032877"
    },
    {
      "job": 85544882367,
      "time": 203,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "8129030986"
    },
    {
      "job": 85544882357,
      "time": 166,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8129023631"
    },
    {
      "job": 85544882353,
      "time": 160,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8129021437"
    },
    {
      "job": 85544882304,
      "time": 201,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "8129055049"
    },
    {
      "job": 85544882302,
      "time": 443,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "8129116612"
    },
    {
      "job": 85544882318,
      "time": 118,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8129041957"
    },
    {
      "job": 85544882305,
      "time": 317,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8129077218"
    },
    {
      "job": 85544423691,
      "time": 220,
      "config": "source",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8128985246"
    },
    {
      "job": 85544882321,
      "time": 148,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 85544882332,
      "time": 92,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 85544882297,
      "time": 55,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 85544882289,
      "time": 70,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "FAIL",
      "artifact": ""
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/alexgenin/actions/runs/28719278055",
  "_status": "failure",
  "_upstream": "https://github.com/alexgenin/chouca",
  "_commit": {
    "id": "bec60d1836f7d0f395eaba48381c5415da138fd2",
    "author": "Alexandre Génin <a.a.h.genin@uu.nl>",
    "committer": "Alexandre Génin <a.a.h.genin@uu.nl>",
    "message": "Minor changes + performance improvements\n",
    "time": 1774625288
  },
  "_maintainer": {
    "name": "Alexandre Genin",
    "email": "alexandre.genin@sete.cnrs.fr",
    "orcid": "0000-0002-3333-1338"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "digest",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "deSolve",
      "role": "Suggests"
    },
    {
      "package": "igraph",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "spatialwarnings",
      "role": "Suggests"
    }
  ],
  "_owner": "alexgenin",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-33",
      "n": 1
    },
    {
      "week": "2025-34",
      "n": 1
    },
    {
      "week": "2026-06",
      "n": 1
    },
    {
      "week": "2026-13",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 10,
  "_contributors": [
    {
      "user": "alexgenin",
      "count": 2,
      "uuid": 8102455
    },
    {
      "user": "olivroy",
      "count": 1,
      "uuid": 52606734
    }
  ],
  "_userbio": {
    "uuid": 8102455,
    "type": "user",
    "name": "Alex Genin",
    "followers": 16,
    "description": "Community Ecology, Interaction networks, Birds, Plants, R stuff, Stats, and the rest. Mastodon: @alexg@ecoevo.social"
  },
  "_downloads": {
    "count": 371,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/chouca"
  },
  "_devurl": "https://github.com/alexgenin/chouca",
  "_searchresults": 3,
  "_topics": [
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/chouca.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/alexgenin/chouca",
  "_realowner": "alexgenin",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.999",
      "date": "2024-02-29"
    },
    {
      "version": "0.1.99",
      "date": "2024-03-07"
    },
    {
      "version": "0.1.991",
      "date": "2026-07-04"
    }
  ],
  "_exports": [
    "as.camodel_initmat",
    "ca_library",
    "camodel",
    "camodel_mat",
    "generate_initmat",
    "landscape_plotter",
    "nb_kernel",
    "run_camodel",
    "run_meanfield",
    "trace_plotter",
    "transition"
  ],
  "_help": [
    {
      "page": "as.camodel_initmat",
      "title": "Convert a matrix to a CA model landscape",
      "topics": [
        "as.camodel_initmat"
      ]
    },
    {
      "page": "ca_library",
      "title": "Library of stochastic cellular automata",
      "topics": [
        "ca_library"
      ]
    },
    {
      "page": "camodel",
      "title": "Definition of a stochastic cellular automaton",
      "topics": [
        "camodel",
        "transition"
      ]
    },
    {
      "page": "camodel_mat",
      "title": "Definition of a stochastic cellular automaton based on numerical arrays",
      "topics": [
        "camodel_mat"
      ]
    },
    {
      "page": "chouca",
      "title": "chouca: a package for stochastic cellular automata",
      "topics": [
        "chouca"
      ]
    },
    {
      "page": "generate_initmat",
      "title": "Generate an initial matrix for a 'chouca' model",
      "topics": [
        "generate_initmat"
      ]
    },
    {
      "page": "landscape_plotter",
      "title": "Plot simulation landscapes",
      "topics": [
        "landscape_plotter"
      ]
    },
    {
      "page": "nb_kernel",
      "title": "Define the neighborhood used in a stochastic cellular automaton",
      "topics": [
        "nb_kernel"
      ]
    },
    {
      "page": "run_camodel",
      "title": "Run a cellular automata",
      "topics": [
        "run_camodel"
      ]
    },
    {
      "page": "run_meanfield",
      "title": "Mean field model",
      "topics": [
        "run_meanfield"
      ]
    },
    {
      "page": "trace_plotter",
      "title": "Plot simulation covers",
      "topics": [
        "trace_plotter"
      ]
    },
    {
      "page": "update.ca_model",
      "title": "Update a cellular automaton",
      "topics": [
        "update.ca_model"
      ]
    }
  ],
  "_readme": "https://github.com/alexgenin/chouca/raw/HEAD/README.md",
  "_rundeps": [
    "digest",
    "plyr",
    "Rcpp",
    "RcppArmadillo"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "chouca",
  "_universes": [
    "alexgenin"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.99",
      "date": "2026-07-07T05:45:22.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "bec60d1836f7d0f395eaba48381c5415da138fd2",
      "fileid": "https://r2.ropensci.org/4d9d208ec88e0b5468a7e65f1011cbb7f7d8ca504a9e176ec381a85d8f0cfc6d",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/alexgenin/actions/runs/28719278055"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.99",
      "date": "2026-07-07T05:45:09.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "bec60d1836f7d0f395eaba48381c5415da138fd2",
      "fileid": "https://r2.ropensci.org/b3dced1e5571919c35a6f9d554bf80a6f8f88c91c4197630f064ef06a2e2c2f6",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/alexgenin/actions/runs/28719278055"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.2.99",
      "date": "2026-07-07T05:44:41.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "bec60d1836f7d0f395eaba48381c5415da138fd2",
      "fileid": "https://r2.ropensci.org/5004cae5a8284cd5c72ec8ae48b6f491892c77ba5815b5a27a7e3f30c1ce48ec",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/alexgenin/actions/runs/28719278055"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.2.99",
      "date": "2026-07-07T05:44:26.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "bec60d1836f7d0f395eaba48381c5415da138fd2",
      "fileid": "https://r2.ropensci.org/f62f4902e7a8d31e7c7552baeff061c18b409bbdd2d849bb23c63c86b2e786f3",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/alexgenin/actions/runs/28719278055"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.99",
      "date": "2026-07-07T05:47:01.000Z",
      "arch": "aarch64",
      "commit": "bec60d1836f7d0f395eaba48381c5415da138fd2",
      "fileid": "https://r2.ropensci.org/d2addb123e2e53529c2c36b495b4322f892b5cae1d46b4ef0b572cffd8d0bdcd",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/alexgenin/actions/runs/28719278055"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.99",
      "date": "2026-07-07T05:49:53.000Z",
      "arch": "x86_64",
      "commit": "bec60d1836f7d0f395eaba48381c5415da138fd2",
      "fileid": "https://r2.ropensci.org/70e90d61da38ecd2742eb345573597eb4c0e13bfbc94fe597c712e5dd8bf8731",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/alexgenin/actions/runs/28719278055"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.2.99",
      "date": "2026-07-07T05:46:13.000Z",
      "arch": "aarch64",
      "commit": "bec60d1836f7d0f395eaba48381c5415da138fd2",
      "fileid": "https://r2.ropensci.org/83820bab5d9b3d21002836ad71759c71f124b4b95dab85c8720d571db42acbf8",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/alexgenin/actions/runs/28719278055"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.2.99",
      "date": "2026-07-07T05:47:54.000Z",
      "arch": "x86_64",
      "commit": "bec60d1836f7d0f395eaba48381c5415da138fd2",
      "fileid": "https://r2.ropensci.org/e446fa30c3478c69840bf2daa65313371ca42c1b3ae097ee60ad2b511080b7d1",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/alexgenin/actions/runs/28719278055"
    }
  ]
}